PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G118500.1
Common NamePOPTR_0005s12050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 428aa    MW: 49453.8 Da    PI: 6.038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G118500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-17173219148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd ll+++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  Potri.005G118500.1 173 KGQWTAEEDSLLIRLVDEFGIRKWSHIAQIFP-GRIGKQCRERWHNHL 219
                         799*****************************.*************97 PP
2Myb_DNA-binding53.27.1e-17227267345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          W++eEd  l++a+k+ G++ W+ Ia+ ++ gRt++++k++w+
  Potri.005G118500.1 227 IWSEEEDRVLIQAHKEIGNK-WAEIAKSLP-GRTENSIKNHWN 267
                         6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.438168223IPR017930Myb domain
SuperFamilySSF466897.91E-32170266IPR009057Homeodomain-like
SMARTSM007171.6E-15172221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-28174226IPR009057Homeodomain-like
PfamPF139215.4E-16176230No hitNo description
CDDcd001671.27E-14176219No hitNo description
PROSITE profilePS5129420.775224274IPR017930Myb domain
SMARTSM007175.5E-16224272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21227272IPR009057Homeodomain-like
CDDcd001676.36E-13228270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MFSPDNYLRK PYMKEYVFPC ETPSAKSFLQ DFNHLDQLHA NRSLFGVLTG SNSDSLDVFP  60
YRLSPATHLY ECDYKPYTNN NNGLYGRDNF QSGGCLNLPQ ENLIDMIGPN QSHMSLDLQE  120
TKPMNVEVLD GTPCATTKYD YYTKGGLYKN DAILPLTRRT GKTPKKEPIN LVKGQWTAEE  180
DSLLIRLVDE FGIRKWSHIA QIFPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDRVLIQAH  240
KEIGNKWAEI AKSLPGRTEN SIKNHWNATK RRQTCTSKRK SRSKYPKGSL LQEYIKSLNL  300
DSIPKVKRRQ RRRRTAKYPD AVLGSSTTMK EPSDEQPQQD LNLCENNDGP VLHYDFDEIP  360
DFDFDETIFQ DVCSIDSLLD EIDCDPVVNE KVLAMEVPRA DEIPFQDFEM MDEVDLWRSD  420
LKTLGMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-441712742105C-Myb DNA-Binding Domain
1msf_C1e-441712742105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311VKRRQRR
2306313KRRQRRRR
3307312RRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G118500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383150.10.0transcription factor MYB98
TrEMBLB9MXK40.0B9MXK4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-74myb domain protein 98