PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G118000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27123.9 Da    PI: 9.8302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G118000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+k++ey+s
  Potri.005G118000.2  9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKFHEYIS 59
                        68***********************************************86 PP
2K-box81.81.5e-2771162192
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yqk+ g +l++a++e++q++l+kLk+ +++L++e+R+++GedL++Ls+ +L+ Leq++ ++l+ +R +K++++++q+e+ +kk ++l+e++
  Potri.005G118000.2  71 YQKALGIDLWSAQYEKMQEQLRKLKDINHKLKKEIRQRIGEDLNELSIDHLRVLEQNMTEALNGVRGRKYHVIKTQTETYKKKVRSLEERE 161
                         78899999*******************************************************************************9987 PP

               K-box  92 k 92 
                         +
  Potri.005G118000.2 162 E 162
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-37295IPR002100Transcription factor, MADS-box
CDDcd002654.60E-40280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1882161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.09784177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKFHEYISP  60
STTTKKIYDQ YQKALGIDLW SAQYEKMQEQ LRKLKDINHK LKKEIRQRIG EDLNELSIDH  120
LRVLEQNMTE ALNGVRGRKY HVIKTQTETY KKKVRSLEER EERHGNLWME YEAKMEDPRY  180
GLVDSEGDYE SAAALVNGAS NLYAFRLHQG HHHHHPNLHL AGGFGPHDLR LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16171169MEF2C
5f28_B5e-16171169MEF2C
5f28_C5e-16171169MEF2C
5f28_D5e-16171169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G118000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3596068e-80AY359606.1 Populus tomentosa sex female APETALA3 (AP3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456101.11e-174floral homeotic protein PMADS 1
SwissprotQ003J21e-125TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2K2AFH71e-173A0A2K2AFH7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12000.11e-137(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]