PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G112000.1 | ||||||||
Common Name | POPTR_0005s11410g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28992.2 Da PI: 9.3557 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl Potri.005G112000.1 14 KGAWTREEDKRLVAYIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.4e-18 | 67 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ +W++Ia +++ gRt++++k++w+++ Potri.005G112000.1 67 RGNFTEEEDELIIKLHSLLGNNnkvfillsRWSLIAGRLP-GRTDNEIKNYWNTH 120 89**************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.399 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-26 | 13 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.907 | 62 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-14 | 66 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-16 | 67 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-26 | 69 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.13E-12 | 69 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRSPCCERA HTNKGAWTRE EDKRLVAYIQ AHGEGCWRSL PKSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNNNK VFILLSRWSL IAGRLPGRTD NEIKNYWNTH 120 IRKKLLSRGI DPSTHRPINE SAIDSMTTSL GAVLKEEITS GFGCKNQKNP NGEKCQELNL 180 ELRICPPYQH PTQSMESIGR KIMCFYCSLG LKNSKDCSCS NDSDDFLVMK NGALDYRRQK 240 AKRDSEVGLF IVNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 13 | 125 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 243 | RRQKAKRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12520 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G112000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383085.2 | 1e-180 | myb-related protein 308 | ||||
Swissprot | P81393 | 1e-102 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2K2AF67 | 1e-178 | A0A2K2AF67_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s11410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-92 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G112000.1 |
Entrez Gene | 18099174 |
Publications ? help Back to Top | |||
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