PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G103200.1 | ||||||||
Common Name | POPTR_0005s10610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 29443.8 Da PI: 7.6251 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.7 | 2.6e-41 | 7 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yL+k v g+++ ++i ++iy++ePwdLp k +e+ewyf ++r++ r++r+t++gyWkatg+d+++ Potri.005G103200.1 7 PGFRFHPTEEELLDFYLTKTVLGQDTA--DIIGFLNIYNHEPWDLPGLSKIGEREWYFLVHRESVL---GRPRRTTEKGYWKATGSDRPIR 92 9***********************943..68***************8778899********99976...59*******************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++l g +kt+vfy+grap+g+ktdWvm+eyrl Potri.005G103200.1 93 CLmdPKRLLGHRKTMVFYRGRAPRGSKTDWVMNEYRL 129 87667888***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.89 | 5 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-47 | 5 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-23 | 7 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MEFDGLPGFR FHPTEEELLD FYLTKTVLGQ DTADIIGFLN IYNHEPWDLP GLSKIGEREW 60 YFLVHRESVL GRPRRTTEKG YWKATGSDRP IRCLMDPKRL LGHRKTMVFY RGRAPRGSKT 120 DWVMNEYRLP SNCYLSKEIV LCKVYRKATS LKVLEQRAAI EEIVRAPNVT SLSPPMQGNF 180 SFYDHQKSFN KFLLEQNNVV HKVEGVTVIE EEEDNKIGYP SQIMGVGPIK EHYSELLSPK 240 LVLDWTMDSL WPN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-35 | 7 | 147 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.12522 | 0.0 | bud| catkin |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G103200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307224.3 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 1e-71 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A2K2AER3 | 0.0 | A0A2K2AER3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s10610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-84 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G103200.1 |
Entrez Gene | 7492134 |
Publications ? help Back to Top | |||
---|---|---|---|
|