PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G101000.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 322aa MW: 36998 Da PI: 9.9092

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G101000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.5	7.1e-25	199	248	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i led+ k+F lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Potri.005G101000.2 199 ARIALEDVVKCFGLPIVEASRNLKVGLTVLKRKCRELGIPRWPHRKIKSL 248 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.11	183	268	IPR003035	RWP-RK domain
Pfam	PF02042	9.6E-20	201	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MASSLIALLV FENNINKELV RSLHVYRLKD GKEKEVEREF VFSVDGPYVE MKAGPILRLR 60 RFQVLELFEG QVIGLWRCIF AFHVNNPPHL SHSSFLLSVS RNPKLKSIPT LAKDIHFILK 120 LSCKTDNEEP SRFSSKEICE VDRDNCHQSK KSLPVLDQDL NCLPNSVSPS ELSKSEQIEL 180 CAAGVMEKKK KRAASEDIAR IALEDVVKCF GLPIVEASRN LKVGLTVLKR KCRELGIPRW 240 PHRKIKSLDS LICSLQEEAE RHKQDNEDTT MAVAKRRRML EREKETIEKK PFMEIQSETK 300 RFRQDVFKRR HRARALGNQG L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G101000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456810.1	0.0	protein RKD5 isoform X1
Swissprot	O81791	8e-93	RKD5_ARATH; Protein RKD5
TrEMBL	A0A2K2AEL0	0.0	A0A2K2AEL0_POPTR; Uncharacterized protein
STRING	POPTR_0005s10400.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-91	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Potri.005G101000.2

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]