PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G100300.1
Common NamePOPTR_0005s10330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 281aa    MW: 29265.7 Da    PI: 7.219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G100300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05149170223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ Cg++F ++     H+r H
  Potri.005G100300.1 149 TCSTCGRTFASWKAVFGHMRAH 170
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.995148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTNNNNNNNN KDAAAIPDKA NEHSEAANSP RRNLNDQEEA IAPPRPTVQR STVETGGPSS  60
VSGPARPAGT EVGASPAAVT LTGGASPSTP VRIGGSGTAA VDPSTVAATV VAGEGSSLRK  120
RSGKGEESSP HVSKKAKGEM DINPDAEPTC STCGRTFASW KAVFGHMRAH PDRGWRGAFP  180
PPEWSPEKPN DQQGDQSALR SQLAPRLLSL AIDTLNQMKH DQGHEAGSST NRRNFDLNTE  240
PPRESESNSG SSSPPSSGNR FDLNKPPKAD HNNGNEGASK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G100300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306426.10.0uncharacterized protein LOC7492122
TrEMBLB9H6610.0B9H661_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Representative plantOGRP1129035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-14C2H2 family protein