PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G098200.3 | ||||||||
Common Name | POPTR_0005s10100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 28169.8 Da PI: 9.0635 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.9 | 5.2e-33 | 7 | 82 | 53 | 129 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++vl+ kg+lvg++ktLvfy+grapkg++tdWvmhe+rle Potri.005G098200.3 7 VGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHVLR-KGTLVGMRKTLVFYQGRAPKGKRTDWVMHEFRLE 82 4679*************************************9.999****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.59 | 1 | 105 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-39 | 5 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-15 | 12 | 81 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAEAARVGGK EWYFYSQRDR KYATGLRTNR ATASGYWKAT GKDRHVLRKG TLVGMRKTLV 60 FYQGRAPKGK RTDWVMHEFR LEGPLGPPKI SSDKEDWVLC RVFYKSNREV VAKPSMRSCN 120 DDTGSSSLPA LLDSYITYEQ TQPNLDEHEQ VPCFSIFSQN QTSQNLLAPY TTQMEAPNAP 180 AKCTSPFGKV PMDITTPLDS FSCDTKVLKT VLNNLTKMES YGNLKGSPSL GEGSSESYIS 240 EVGMSSLWNH Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 1 | 107 | 62 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 1 | 107 | 62 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 1 | 107 | 62 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 1 | 107 | 62 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 1 | 107 | 65 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 1 | 107 | 62 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 1 | 107 | 62 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G098200.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456646.1 | 0.0 | NAC domain-containing protein 21/22 isoform X3 | ||||
Swissprot | Q84TE6 | 7e-88 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A3N7F4G5 | 0.0 | A0A3N7F4G5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s10100.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 1e-84 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G098200.3 |
Entrez Gene | 7492113 |