PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G098000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 290aa    MW: 32780.4 Da    PI: 9.7477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G098000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.61.1e-276113953128
                 NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s    ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  Potri.005G098000.2  61 VGDKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVFSLggeGRDSIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 139
                         278999***********************************986666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.5429171IPR003441NAC domain
PfamPF023651.7E-1214139IPR003441NAC domain
SuperFamilySSF1019411.96E-3160171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMMMKKKFNF QGFDFTQQMK NLLGSIFVEW LTRSLSELNS SNKSRSTNMT LGIYQVKSSC  60
VGDKEGYFFC KRGRKYRNSI RPNRVTGSGF WKATGIDKPV FSLGGEGRDS IGLKKTLVYY  120
RGSAGKGTKT DWMMHEFRLP TKDNSTSTAT VKAKISDQEA EVWTLCRIFK RNVSCRKYTP  180
DLKQLSTTPQ QPPIDTSSKL CCQVESNYTQ ESYVNFGAPL IQHYDNKPPV HHVKERKPLH  240
VDQLSYVAQP PSMASSLNIS SPYGNQILTH GDWDELTSVV DCAFDPFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-285917766171NO APICAL MERISTEM PROTEIN
1ut4_B3e-285917766171NO APICAL MERISTEM PROTEIN
1ut7_A3e-285917766171NO APICAL MERISTEM PROTEIN
1ut7_B3e-285917766171NO APICAL MERISTEM PROTEIN
3swm_A3e-285917769174NAC domain-containing protein 19
3swm_B3e-285917769174NAC domain-containing protein 19
3swm_C3e-285917769174NAC domain-containing protein 19
3swm_D3e-285917769174NAC domain-containing protein 19
3swp_A3e-285917769174NAC domain-containing protein 19
3swp_B3e-285917769174NAC domain-containing protein 19
3swp_C3e-285917769174NAC domain-containing protein 19
3swp_D3e-285917769174NAC domain-containing protein 19
4dul_A3e-285917766171NAC domain-containing protein 19
4dul_B3e-285917766171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G098000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306415.11e-176transcription factor JUNGBRUNNEN 1
TrEMBLB9H6381e-174B9H638_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10080.11e-175(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.19e-65NAC family protein