PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G098000.1
Common NamePOPTR_0005s10080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 309aa    MW: 35333 Da    PI: 8.2586
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G098000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.64.4e-48301582128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPtdeelv +yL++ v++k+l++ e ik+v+iyk++PwdLpk+   ++ke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v
  Potri.005G098000.1  30 LPGFRFHPTDEELVGFYLRRMVDKKPLRI-ELIKQVEIYKYDPWDLPKSSCVGDKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPV 119
                         59***************************.89***************8767799************************************* PP

                 NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s    ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  Potri.005G098000.1 120 FSLggeGRDSIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 158
                         *986666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5329190IPR003441NAC domain
PROSITE profilePS5100551.75329190IPR003441NAC domain
PfamPF023652.3E-2431158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVEKIINMNS QDHLRSTNYK DDDDEEEVQL PGFRFHPTDE ELVGFYLRRM VDKKPLRIEL  60
IKQVEIYKYD PWDLPKSSCV GDKEGYFFCK RGRKYRNSIR PNRVTGSGFW KATGIDKPVF  120
SLGGEGRDSI GLKKTLVYYR GSAGKGTKTD WMMHEFRLPT KDNSTSTATV KAKISDQEAE  180
VWTLCRIFKR NVSCRKYTPD LKQLSTTPQQ PPIDTSSKLC CQVESNYTQE SYVNFGAPLI  240
QHYDNKPPVH HVKERKPLHV DQLSYVAQPP SMASSLNISS PYGNQILTHG DWDELTSVVD  300
CAFDPFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-473119619171NO APICAL MERISTEM PROTEIN
1ut4_B8e-473119619171NO APICAL MERISTEM PROTEIN
1ut7_A8e-473119619171NO APICAL MERISTEM PROTEIN
1ut7_B8e-473119619171NO APICAL MERISTEM PROTEIN
3swm_A8e-473119622174NAC domain-containing protein 19
3swm_B8e-473119622174NAC domain-containing protein 19
3swm_C8e-473119622174NAC domain-containing protein 19
3swm_D8e-473119622174NAC domain-containing protein 19
3swp_A8e-473119622174NAC domain-containing protein 19
3swp_B8e-473119622174NAC domain-containing protein 19
3swp_C8e-473119622174NAC domain-containing protein 19
3swp_D8e-473119622174NAC domain-containing protein 19
4dul_A8e-473119619171NAC domain-containing protein 19
4dul_B8e-473119619171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G098000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306415.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLB9H6380.0B9H638_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-91NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]