PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G096600.1
Common NamePOPTR_0005s09930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 368aa    MW: 41810.6 Da    PI: 6.5246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G096600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Potri.005G096600.1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                        89******************************99************97 PP
2Myb_DNA-binding53.17.3e-1769114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Potri.005G096600.1  69 RGNFSKEEEDTIIKLHQTLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.0691163IPR017930Myb domain
SuperFamilySSF466891.54E-2914110IPR009057Homeodomain-like
SMARTSM007171.5E-111565IPR001005SANT/Myb domain
PfamPF002499.0E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221770IPR009057Homeodomain-like
CDDcd001671.24E-81863No hitNo description
PROSITE profilePS5129424.93764118IPR017930Myb domain
SMARTSM007171.3E-1568116IPR001005SANT/Myb domain
PfamPF002497.8E-1669114IPR001005SANT/Myb domain
CDDcd001676.85E-1071114No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2771118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKGRAPCCD KTQVMRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSKEEEDTI IKLHQTLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLTL  120
KDDDERPKGD ELKESSSTSS SSSTSSTIVS SGKRNLEMEL YQQKNQGSST KKPRILEKAK  180
DSSPREVSNQ YRPTKKPKEL SSSSISSNNS NITNSSQVDV SKSEDDQIGS LLNFRGLYDV  240
HSSSEEVNKP EEITAEIPLE SDYDFWNMLD SLSYLQSNEV QLENVEACQI SKFGDAYNIG  300
EVDQNKKWLR YLENELGLDV TKDENQESSL KNAAETLVPE NFQYEMPLKP AEVHPGTIEN  360
FHLWPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25131181105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G096600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307190.10.0transcription factor MYB10
TrEMBLB9H6240.0B9H624_POPTR; Uncharacterized protein
STRINGPOPTR_0005s09930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-75myb domain protein 58
Publications ? help Back to Top
  1. Zhao Y,Sun J,Xu P,Zhang R,Li L
    Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species.
    Plant Physiol., 2014. 164(2): p. 765-76
    [PMID:24394777]