PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G094900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 266aa    MW: 29800.6 Da    PI: 6.0787
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G094900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.8e-56851891102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+
  Potri.005G094900.1  85 QLQMFWTNQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDV 175
                         89*******88889***************************************************************************** PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdi+prdelk
  Potri.005G094900.1 176 FDFLVDIIPRDELK 189
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.21E-3465179IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3799171IPR009072Histone-fold
PfamPF008082.3E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQSEQTQQQ QSQQQQQQPV MGVAASAGQV AYASTPYQTA PMVASGTPSI AIPSQTQPPA  60
TFSNSPHQLT YQQAQHFHHQ QQQQQLQMFW TNQMHEIEQT TDFKNHSLPL ARIKKIMKAD  120
EDVRMISAEA PVIFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV  180
DIIPRDELKE EGLGVTKSTI PVVGSPADLP YYYVPQHPVG PPGMIMGNPV DQAATYGAQQ  240
PRPPMAFMPW PQPQPQQPQQ RQSDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5893185395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G094900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167700.0AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307183.30.0nuclear transcription factor Y subunit C-2
RefseqXP_024457549.10.0nuclear transcription factor Y subunit C-2
TrEMBLA0A2K2AE680.0A0A2K2AE68_POPTR; NF-YC family protein
STRINGPOPTR_0005s09770.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-82nuclear factor Y, subunit C2