PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G090300.3

Common Name

POPTR_0005s09250g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 273aa MW: 27700 Da PI: 10.3893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G090300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	9.7e-39	36	127	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s Potri.005G090300.3 36 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSIssls 126 78*******************************************************************8883333333333222222222 PP TCP 89 k 89 + Potri.005G090300.3 127 S 127 0 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-33	42	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	42	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSDNSGAVNN GALIDPQRNQ PPGGGGGGGA TNGALAVKKP PSKDRHSKVD GRGRRIRMPI 60 ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSVRAGGNSN 120 SISSLSSNNV HSAASLDHKP LLGPAPFILG KRMRPEEDGN GGKDDGGVPV GPTIGSLMGP 180 TATAAAGSGG FWALPARADF WGFAAAPPEM VVQPTAVQQS SLFMHQQHAA AAAAMGEASA 240 ARLGNYLPGH LNLLASLSGG SGSSGRREED QR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G090300.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310642.2	0.0	transcription factor TCP21
Swissprot	Q9FMX2	5e-93	TCP7_ARATH; Transcription factor TCP7
TrEMBL	B9H5Q1	0.0	B9H5Q1_POPTR; TCP family protein
STRING	POPTR_0005s09250.2	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-53	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.005G090300.3
Entrez Gene	7486364