PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G085200.2

Common Name

POPTR_0005s08720g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 205aa MW: 22659.8 Da PI: 5.9296

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G085200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.9	4.7e-29	114	172	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s gC vkk+ver+ ed +v++tY g Hnhe Potri.005G085200.2 114 MDDGFKWRKYGKKSVKNSPHPRNYYKCSSGGCDVKKRVERDGEDSAYVITTYDGVHNHE 172 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-31	102	174	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-27	107	174	IPR003657	WRKY domain
PROSITE profile	PS50811	30.194	109	174	IPR003657	WRKY domain
SMART	SM00774	6.8E-33	114	173	IPR003657	WRKY domain
Pfam	PF03106	5.4E-23	115	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSLPLSTTCQ PPLLYAMNFP EINPNHDFSY FNEGFDPPAT EFQVSDYLML DDGFGEDNSS 60 SQSMASSEQV PSGSSSGYSG ATSRNNSMQN GVKKNKIEGG HRVAFRTKSE LEVMDDGFKW 120 RKYGKKSVKN SPHPRNYYKC SSGGCDVKKR VERDGEDSAY VITTYDGVHN HESPCMVYYN 180 NQIPLAVPNA WTFQDSSPHS SSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-25	102	174	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G085200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456867.1	1e-129	probable WRKY transcription factor 51
Swissprot	Q93WU9	4e-48	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2K2ADP4	1e-128	A0A2K2ADP4_POPTR; Uncharacterized protein
STRING	POPTR_0005s08720.1	1e-152	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-45	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Potri.005G085200.2
Entrez Gene	7486341

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]