PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G082000.5

Common Name

POPTR_0005s08370g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 363aa MW: 40835.1 Da PI: 7.7128

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G082000.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5.2e-12	75	115	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k++rr+++NReAAr+sR+RKka++++Le +L + Potri.005G082000.5 75 PSDKVQRRLAQNREAARKSRLRKKAYVQQLESSRTKLLQLE 115 689****************************8655555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.6E-9	69	123	No hit	No description
SMART	SM00338	1.8E-8	74	156	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-8	76	112	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	76	118	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.66E-7	78	118	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-29	164	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNSTSTQFVT SGRMGIYDPM HQIGMWGENF KSNRNTSTST MFIAAPDTKL DNQSEDTSQG 60 TLGPSNKYDQ EASKPSDKVQ RRLAQNREAA RKSRLRKKAY VQQLESSRTK LLQLEQELDR 120 ARQQGLYIGG GVDTSQLGFG GATNSEIPTF EMEYGHWLEG QNRHICDMRI ALNAHISDAE 180 LHILVERGMS HYSELFRMKA TAAKADVFYV MSGLWKSSAE RFLLWIGGFR PSELLKILLP 240 HIEPLSEQQV VNALNLRQSC QQAEDALSQG MEKLQQTLAE TVAAGQLGEA SYSPHKETAT 300 EKRNDLVRFV QQADHLRQET LQQMSRILTT HQAARGLLAL GEYFQRLRDL SSLWAIRPCE 360 PA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNSTSTQFVT SGRMGIYDPM HQIGMWGENF KSNRNTSTST MFIAAPDTKL DNQSEDTSQG  60
TLGPSNKYDQ EASKPSDKVQ RRLAQNREAA RKSRLRKKAY VQQLESSRTK LLQLEQELDR  120
ARQQGLYIGG GVDTSQLGFG GATNSEIPTF EMEYGHWLEG QNRHICDMRI ALNAHISDAE  180
LHILVERGMS HYSELFRMKA TAAKADVFYV MSGLWKSSAE RFLLWIGGFR PSELLKILLP  240
HIEPLSEQQV VNALNLRQSC QQAEDALSQG MEKLQQTLAE TVAAGQLGEA SYSPHKETAT  300
EKRNDLVRFV QQADHLRQET LQQMSRILTT HQAARGLLAL GEYFQRLRDL SSLWAIRPCE  360
PA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G082000.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF195119	0.0	EF195119.1 Populus tremula x Populus alba TGA transcription factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457310.1	0.0	transcription factor TGA1 isoform X2
Swissprot	Q39237	1e-178	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2K2ADF1	0.0	A0A2K2ADF1_POPTR; Uncharacterized protein
STRING	POPTR_0005s08370.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Potri.005G082000.5
Entrez Gene	7486326

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]