PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G077300.1 | ||||||||
Common Name | POPTR_0005s07900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 373aa MW: 41404.2 Da PI: 6.424 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 5.8e-21 | 172 | 222 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+++taeeAa a+++a+ kl+ge Potri.005G077300.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTYDTAEEAALAYDNAAYKLRGE 222 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.14E-34 | 171 | 231 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-23 | 172 | 230 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.261 | 172 | 229 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 172 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-38 | 172 | 235 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-14 | 173 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 173 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MAAAIDIYNT TVPVFSDPCR EELMKALEPF MKSASPSPTS TYSSPSPSTS SPPFSSHPSC 60 FYNNNSLISS YPNLDLSFCS PTSTQMFSNG FLDYNQMGFE QTGPIGLNHL TPSQILQIQA 120 KIHFQQQQQQ KMENLATTTS QFVHNQRASN FLAPKPVPMK QSAASPQKPT KLYRGVRQRH 180 WGKWVAEIRL PKNRTRLWLG TYDTAEEAAL AYDNAAYKLR GEYARLNFPH LRHQGAHVSG 240 EFGDYKPLHS SVDAKLQAIC QSLGLQKQGK TREPSSVANS KKTATAPLQA KIEDDCSLRG 300 ELKTEYENFG VEDYKVEIPS PSPASSDESL AGSSSPESEI SFLDFSGSLQ WDEFENFGLE 360 KYPSVEIDWS SI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 171 | 229 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.10054 | 0.0 | bud| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G077300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF597499 | 0.0 | EF597499.1 Populus euphratica dehydrate responsive element-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307098.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | B9H544 | 0.0 | B9H544_POPTR; ERF family protein | ||||
STRING | POPTR_0005s07900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-65 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G077300.1 |
Entrez Gene | 7471518 |