PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G071100.1
Common NamePOPTR_0005s07210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 315aa    MW: 34776 Da    PI: 7.6444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G071100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79.1e-13101152155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  +r+++P++   + ++++ a+i   A++++k+L+
  Potri.005G071100.1 101 QRMTHIKVERNRRKQMNDYLTVIRSMMPPS---YVQRPDQASIIGGAINFVKELE 152
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-11100154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.329100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15100179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-10100156No hitNo description
PfamPF000104.1E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALETVVFQQ DPSSTLGLGA TWIHGFGLEG EKANYHETLN TTISNIGSDF HPNNNWDTNN  60
SSSQEISCAC KGGFFTGGNA AGRRKRQRRI SIKDEAEVAH QRMTHIKVER NRRKQMNDYL  120
TVIRSMMPPS YVQRPDQASI IGGAINFVKE LEKLTQSLEA HKQVNKVQSG TNSNCSSLFS  180
DFFSFSQYST ASSTNKQSNS NNSSPSTDSM LAEKQPIAIA DVEVTMTERH ANLKILSRRH  240
PKQLLKMVTG LHSLGLYTLH LNVTTVGQMV LYSFSVKVED ECRLTSVDEI AAAVHEIAGR  300
IQEDAISNCM PSSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101112RMTHIKVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G071100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164470.0AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306288.10.0transcription factor bHLH94 isoform X1
TrEMBLB9H4P90.0B9H4P9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-55bHLH family protein