PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G066100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 29329.5 Da PI: 8.5767 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51 | 1.9e-16 | 190 | 223 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ kTp+WR gp g+ktLCnaCG++y + Potri.005G066100.1 190 CTHCQIDKTPQWRIGPLGPKTLCNACGVRYNTGR 223 ******************************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.8E-11 | 184 | 234 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.56E-13 | 187 | 244 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.0E-13 | 188 | 221 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.95E-13 | 189 | 238 | No hit | No description |
Pfam | PF00320 | 4.3E-14 | 190 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.908 | 190 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MELYIAATFC LIREWLSFHG EIKLTPCRTS LEMPPKTEML NLNRARSLSS GQPQSSYVPM 60 GTPAHKRVVI LFVDFGQQLH EGPTSDDVCN VSDDFDWIGS ELSAPQDPIE CVTDVFDGFI 120 STNELSFLED FGDFLGKSEE EIKTTPSRDF KFGMTKKKPR SKRRSKQRAW PMKDFVFSAL 180 ENHEFRKRIC THCQIDKTPQ WRIGPLGPKT LCNACGVRYN TGRLLPEYRP AASPSFDQNK 240 HSNLHKQILR RRANLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G066100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU056812 | 8e-31 | KU056812.1 Salix suchowensis mitochondrion, complete genome. | |||
GenBank | KU198635 | 8e-31 | KU198635.1 Salix purpurea mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457129.1 | 1e-157 | GATA transcription factor 7 | ||||
TrEMBL | A0A3N7G8B6 | 1e-155 | A0A3N7G8B6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s06720.1 | 1e-126 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16347 | 7 | 9 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 9e-30 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G066100.1 |