PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G051700.3
Common NamePOPTR_0005s05330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 442aa    MW: 50899.6 Da    PI: 8.399
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G051700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix864.5e-27293379186
            trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ ++ +  +g++k+p We++s+ m e g++rs+k+Ck+kwen+nk+++k+k+ +kkr   +s+t pyf+ql 
  Potri.005G051700.3 293 RWPRDEVLALINLRCSLYNNNEdkEGSAKAPVWERISQGMLELGYKRSAKRCKQKWENINKYFRKTKDASKKR-YINSRTSPYFHQLS 379
                         8*************9766655522799*********************************************8.677789******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.45E-23292359No hitNo description
PfamPF138372.1E-18292379No hitNo description
PROSITE profilePS500906.528293352IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDNWFPEFTW EHASSRNLAE VGFKRSTEKW KEKFEEESGY FNSNIDIYSK NYRASFSEFE  60
EIYHGDQNPD QQEATAGEKK IRKPSEDEQQ DKMGQNLEEE TRIDQTVGNQ SVEDNDGKLE  120
QFEKSKRKKR KREKKFEMFK GICEDIVNKM MAQQEEKHNK LLEDIVKRDE EKFAREEAWK  180
KLEMDRINKE LELRAHEQAL AGDRLDTLIK FLKKITSAQN PNPASQTKPQ NPNSTLAPNI  240
PQAPTTSSTL ALAPQNPNSL NSHNSPSGPS SILPMYKVQA KSTSNDEDDI GKRWPRDEVL  300
ALINLRCSLY NNNEDKEGSA KAPVWERISQ GMLELGYKRS AKRCKQKWEN INKYFRKTKD  360
ASKKRYINSR TSPYFHQLST LYNHGTLVAP KNRSASPENQ SNLSETRHSS SSSQNGTSNS  420
AMHVVEGEKN KVQVPPFDFE F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131KRKKRKR
2126131RKKRKR
3126133RKKRKREK
4126134RKKRKREKK
5127134KKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G051700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456172.10.0trihelix transcription factor GTL2
TrEMBLA0A2K2ABY60.0A0A2K2ABY6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-82Trihelix family protein