PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G051700.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 496aa    MW: 56278.4 Da    PI: 7.0984
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G051700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.85.4e-27347433186
            trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ ++ +  +g++k+p We++s+ m e g++rs+k+Ck+kwen+nk+++k+k+ +kkr   +s+t pyf+ql 
  Potri.005G051700.2 347 RWPRDEVLALINLRCSLYNNNEdkEGSAKAPVWERISQGMLELGYKRSAKRCKQKWENINKYFRKTKDASKKR-YINSRTSPYFHQLS 433
                         8*************9766655522799*********************************************8.677789******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-18346433No hitNo description
CDDcd122037.47E-24346413No hitNo description
PROSITE profilePS500906.528347406IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MHHQEVGFKR STEKWKEKFE EESGYFNSNI DIYSKNYRAS FSEFEEIYHG DQNPDQQEAT  60
AGEKKIRKPS EDEQQDKMGQ NLEEETRIDQ TVGNQSVEDN DGKLEQFEKS KRKKRKREKK  120
FEMFKGICED IVNKMMAQQE EKHNKLLEDI VKRDEEKFAR EEAWKKLEMD RINKELELRA  180
HEQALAGDRL DTLIKFLKKI TSGDSYAEIL GETSAPDVVK VPKCSNASTS SSLLLAQNPN  240
PASQTSCESQ LETPTSSTTT LDHQKSTSMP AKSNTSCTEN QEPQNPNSTL APNIPQAPTT  300
SSTLALAPQN PNSLNSHNSP SGPSSILPMY KVQAKSTSND EDDIGKRWPR DEVLALINLR  360
CSLYNNNEDK EGSAKAPVWE RISQGMLELG YKRSAKRCKQ KWENINKYFR KTKDASKKRY  420
INSRTSPYFH QLSTLYNHGT LVAPKNRSAS PENQSNLSET RHSSSSSQNG TSNSAMHVVE  480
GEKNKVQVPP FDFEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116KRKKRKR
2111116RKKRKR
3111118RKKRKREK
4111119RKKRKREKK
5112119KKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G051700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456172.10.0trihelix transcription factor GTL2
TrEMBLA0A2K2ABX10.0A0A2K2ABX1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-70Trihelix family protein