PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G051700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 627aa    MW: 71086.9 Da    PI: 6.6405
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G051700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.91.5e-09102167271
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskk.mrergferspkqCkekwenlnkrykkikegekkr 71 
                         W+++evl L+++r++m++++ +       We+ s++ ++e gf+rs ++ kek+e+ ++++    ++ +k+
  Potri.005G051700.1 102 WSNDEVLPLLRIRSSMDNWFPEF-----TWEHASSRnLAEVGFKRSTEKWKEKFEEESGYFNSNIDIYSKN 167
                         ********************998.....9*99876516***********************9888877764 PP
2trihelix85.37.7e-27478564186
            trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ ++ +  +g++k+p We++s+ m e g++rs+k+Ck+kwen+nk+++k+k+ +kkr   +s+t pyf+ql 
  Potri.005G051700.1 478 RWPRDEVLALINLRCSLYNNNEdkEGSAKAPVWERISQGMLELGYKRSAKRCKQKWENINKYFRKTKDASKKR-YINSRTSPYFHQLS 564
                         8*************9766655522799*********************************************8.677789******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.892100154IPR017877Myb-like domain
PfamPF138373.6E-18477564No hitNo description
CDDcd122032.72E-24477544No hitNo description
PROSITE profilePS500906.528478537IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MFEGVADQFH QFIASRTTSL PLPSLSFPPL HGSSNTTNFP SFYPYTATAA TTSQVPLQPN  60
LLHSLHQGSP TNKNDEKQEN NLMAMNLKFE RERSIPELVN PWSNDEVLPL LRIRSSMDNW  120
FPEFTWEHAS SRNLAEVGFK RSTEKWKEKF EEESGYFNSN IDIYSKNYRA SFSEFEEIYH  180
GDQNPDQQEA TAGEKKIRKP SEDEQQDKMG QNLEEETRID QTVGNQSVED NDGKLEQFEK  240
SKRKKRKREK KFEMFKGICE DIVNKMMAQQ EEKHNKLLED IVKRDEEKFA REEAWKKLEM  300
DRINKELELR AHEQALAGDR LDTLIKFLKK ITSGDSYAEI LGETSAPDVV KVPKCSNAST  360
SSSLLLAQNP NPASQTSCES QLETPTSSTT TLDHQKSTSM PAKSNTSCTE NQEPQNPNST  420
LAPNIPQAPT TSSTLALAPQ NPNSLNSHNS PSGPSSILPM YKVQAKSTSN DEDDIGKRWP  480
RDEVLALINL RCSLYNNNED KEGSAKAPVW ERISQGMLEL GYKRSAKRCK QKWENINKYF  540
RKTKDASKKR YINSRTSPYF HQLSTLYNHG TLVAPKNRSA SPENQSNLSE TRHSSSSSQN  600
GTSNSAMHVV EGEKNKVQVP PFDFEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247KRKKRKR
2242247RKKRKR
3242249RKKRKREK
4242250RKKRKREKK
5243250KKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G051700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456172.10.0trihelix transcription factor GTL2
TrEMBLA0A2K2ABY60.0A0A2K2ABY6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-86Trihelix family protein