PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G029000.1

Common Name

POPTR_0005s02870g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1017aa MW: 113601 Da PI: 9.6659

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G029000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W + E e++++a + G++ Wk++a+++ +R+ +++ Potri.005G029000.1 46 QWKKAELERFYKAYRDNGKN-WKKVAAEVR-NRSVEMVE 82 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0081	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-7	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	8.9E-6	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	5.36E-4	47	88	No hit	No description
Pfam	PF06584	5.9E-33	619	719	IPR033471	DIRP domain
SMART	SM01135	4.1E-59	619	720	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence Send to blast
MAPARKKSVN KRFLNEVSPE KEVKSSGKSK QQVNGKKKLS DKLGPQWKKA ELERFYKAYR 60 DNGKNWKKVA AEVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMID HYSVLEASDS 120 ERESNEMPGV LRKLQKHKRP KVLLSASKED PQHFRMVGST DGCLSLLKRG CGRPLHAVGK 180 RTPRFPVSYL RKKDDGENYV SPKKKRRKLE INADDNDDEH AAVLALTEAL QRVDSPQMSQ 240 TPCRRTENMK SSPVQSWDRM SESSPANLCD ASINENWSES GIGRGGPDLA CVRDASSLAE 300 MEGIGTVEVH RKGKKFYGNK IKVEKIGNSQ SDDGGEACSG TEKEQKASTL KGKVEIEMSN 360 AKIDETFHRS QRKRSKKLFS DDEPADLIGL QTLALVSAME FESSCLLDDE RTTQNGDHKS 420 SIPESASTSH HRDKTKFSRQ KEKATSDVEG ATSRKSKLGR YPQSSAKSVS EANKRPQSIS 480 NDMLKRKREA LVAKVLDEEE NTSVVKGKHS AQISSPSKQL KSLKLPDGSF SGDQKTISND 540 LATSTEQVPV ASQVILPTRK TSRRKMDLKR AMIPKVNVLK NQISKYSISL QDEATHLKDK 600 LSCVVSSPMV RRWCTYEWFY SAVDYPWFSR REFVEYLNHV GLGHIPRLTR VEWGVIRSSL 660 GKPRRFSERF LHEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK 720 TRDLHDGSVL TVDHDRCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEALR RQKTSVLPKE 780 LPVNGKSSIG EFTAIEKLRN AQSPMNALMK QAQVEANHAN LLAKATSTDI VNAQGACGQP 840 SRVSQIQLKK YDIRALSELN CALDKKAISS MKEGEDAFAR IGEALDSMDR SHLGSESRAQ 900 MIRSQEEANT GLGLQNQLIP STPEPQVNCN VSGPQSNDSE KIETAIPSEL ISSCVAALLM 960 IQTCTERQYP PSDVAQIIDS AVTSLHPCCP QNLPIYREIQ MCMGRIKTQI LALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence Send to blast

MAPARKKSVN KRFLNEVSPE KEVKSSGKSK QQVNGKKKLS DKLGPQWKKA ELERFYKAYR  60
DNGKNWKKVA AEVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMID HYSVLEASDS  120
ERESNEMPGV LRKLQKHKRP KVLLSASKED PQHFRMVGST DGCLSLLKRG CGRPLHAVGK  180
RTPRFPVSYL RKKDDGENYV SPKKKRRKLE INADDNDDEH AAVLALTEAL QRVDSPQMSQ  240
TPCRRTENMK SSPVQSWDRM SESSPANLCD ASINENWSES GIGRGGPDLA CVRDASSLAE  300
MEGIGTVEVH RKGKKFYGNK IKVEKIGNSQ SDDGGEACSG TEKEQKASTL KGKVEIEMSN  360
AKIDETFHRS QRKRSKKLFS DDEPADLIGL QTLALVSAME FESSCLLDDE RTTQNGDHKS  420
SIPESASTSH HRDKTKFSRQ KEKATSDVEG ATSRKSKLGR YPQSSAKSVS EANKRPQSIS  480
NDMLKRKREA LVAKVLDEEE NTSVVKGKHS AQISSPSKQL KSLKLPDGSF SGDQKTISND  540
LATSTEQVPV ASQVILPTRK TSRRKMDLKR AMIPKVNVLK NQISKYSISL QDEATHLKDK  600
LSCVVSSPMV RRWCTYEWFY SAVDYPWFSR REFVEYLNHV GLGHIPRLTR VEWGVIRSSL  660
GKPRRFSERF LHEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK  720
TRDLHDGSVL TVDHDRCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEALR RQKTSVLPKE  780
LPVNGKSSIG EFTAIEKLRN AQSPMNALMK QAQVEANHAN LLAKATSTDI VNAQGACGQP  840
SRVSQIQLKK YDIRALSELN CALDKKAISS MKEGEDAFAR IGEALDSMDR SHLGSESRAQ  900
MIRSQEEANT GLGLQNQLIP STPEPQVNCN VSGPQSNDSE KIETAIPSEL ISSCVAALLM  960
IQTCTERQYP PSDVAQIIDS AVTSLHPCCP QNLPIYREIQ MCMGRIKTQI LALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	207	RKKDDGENYVSPKKKRRK
2	201	208	PKKKRRKL
3	202	206	KKKRR
4	202	207	KKKRRK
5	203	207	KKRRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G029000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184086	0.0	AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBank	AC214688	0.0	AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456949.1	0.0	protein ALWAYS EARLY 2 isoform X1
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A2K2AAT8	0.0	A0A2K2AAT8_POPTR; Uncharacterized protein
STRING	XP_002512389.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Potri.005G029000.1
Entrez Gene	18098701

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]