PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G027200.2 | ||||||||
Common Name | POPTR_0005s02730g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 464aa MW: 50413.7 Da PI: 9.1359 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.005G027200.2 25 FVCEICNKGFQRDQNLQLHRRGH 47 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Potri.005G027200.2 101 WKCDKCSKKYAVQSDWKAHVKTC 123 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 24 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.04E-7 | 24 | 47 | No hit | No description |
Pfam | PF12171 | 7.3E-5 | 25 | 47 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 25 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 86 | 66 | 96 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 89 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.04E-7 | 96 | 121 | No hit | No description |
SMART | SM00355 | 90 | 101 | 121 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MKYVADPSAD VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRASGE 60 IRKRVYICPE PSCVHHNPAR ALGDLTGIKK HFYRKHGEKK WKCDKCSKKY AVQSDWKAHV 120 KTCGTKEYKC DCGTIFSRRD SFITHRAFCD ALAEENNKVN QGLMPNMEPN IQGQISSLIP 180 SSMAINNNPP SQSAMMSNFS HLDTKNSLSL PQALMPMPPK PSSGSMFSSS TASLFGGSRS 240 MPFNSSSALQ LNANSSAIFE GNGHHNLAGS ASMSATALLQ KAAQMGATAS GNNVSSPMMQ 300 KSFVTSMAPP TFGSMHAQND QSHVIGGDDG YANQFFNSNG GVGNSVLNDM GMFSAVLDQN 360 NALFKTMEHA SSNNENAFQG ANSSPGLSSP TSGANPSGLS RFSGDMMTVD FLGIGGSRQR 420 NLHDQHNHQE MEFSRGISHP RMQGLNHFEQ QQAAALEKPL WDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-34 | 97 | 160 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 8e-34 | 97 | 160 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.4255 | 0.0 | bud| catkin |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G027200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146825 | 0.0 | EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307119.2 | 0.0 | protein indeterminate-domain 2 isoform X1 | ||||
Swissprot | Q9SCQ6 | 1e-110 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | B9H586 | 0.0 | B9H586_POPTR; C2H2 family protein | ||||
STRING | POPTR_0005s02730.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 6e-92 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G027200.2 |
Entrez Gene | 7477114 |
Publications ? help Back to Top | |||
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