PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G014200.1
Common NamePOPTR_0005s01720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 318aa    MW: 36324.6 Da    PI: 5.1643
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G014200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.6e-092552872355
                         SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yp++ee+++L++ +gL+++q+ +WF N+R ++
  Potri.005G014200.1 255 PYPTEEEKAKLSEITGLDQKQINNWFINQRKRH 287
                         8*****************************885 PP
2ELK33.41e-11208228222
                 ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                         LK +L+rKYs +L++L++EF+
  Potri.005G014200.1 208 LKGMLMRKYSAHLSNLRKEFL 228
                         9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-2064108IPR005540KNOX1
PfamPF037903.1E-2065104IPR005540KNOX1
SMARTSM012566.8E-26111162IPR005541KNOX2
PfamPF037911.7E-24114161IPR005541KNOX2
PROSITE profilePS512139.83207227IPR005539ELK domain
SMARTSM011886.4E-6207228IPR005539ELK domain
PfamPF037899.9E-9208228IPR005539ELK domain
PROSITE profilePS5007112.163227290IPR001356Homeobox domain
SuperFamilySSF466893.59E-19229302IPR009057Homeodomain-like
SMARTSM003892.4E-12229294IPR001356Homeobox domain
CDDcd000861.21E-13231291No hitNo description
Gene3DG3DSA:1.10.10.602.8E-27232292IPR009057Homeodomain-like
PfamPF059207.3E-17247286IPR008422Homeobox KN domain
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEEFYRFNPT FFSSPDDTVR LENLPVANFT DATASTATEF HSHASSFLQA GHGHREVTGS  60
DMYDAIKTQI ANHPRYPDLV SAHLECQKVG APPEMVSLLE AIGRGNYKIN SFYEIGADPE  120
LDEFMESYCE VLRRYKEELS KPFDEAATFL SSIESQLSSL CKGTLTKMFD YGSADEPAGT  180
SEEELSCAEV EASESQETTG VSSQEQNLKG MLMRKYSAHL SNLRKEFLKN RKKGKLPKDA  240
RTTLLDWWNH HYRWPYPTEE EKAKLSEITG LDQKQINNWF INQRKRHWKP SEDMRFPRMD  300
GVSGDPGTPP NMLWYCW*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G014200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090451e-147AC209045.1 Populus trichocarpa clone POP061-B03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456722.10.0homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP293e-89KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2K2AA540.0A0A2K2AA54_POPTR; Uncharacterized protein
STRINGPOPTR_0005s01720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-82KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]