PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G230800.2
Common NamePOPTR_0004s23970g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 389aa    MW: 44472.5 Da    PI: 6.3791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G230800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.5e-49351602128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrF+Pt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  Potri.004G230800.2  35 MPGFRFRPTEEELIEFYLRRKVEGKHFNV-ELITFLDLYSYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 124
                         79***************************.89***************8778899************************************* PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Potri.004G230800.2 125 RAENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 160
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5434180IPR003441NAC domain
PROSITE profilePS5100554.00334181IPR003441NAC domain
PfamPF023651.6E-2436160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAIAATMSHN DENNNSNDNT NNKDDDDDHE HDMVMPGFRF RPTEEELIEF YLRRKVEGKH  60
FNVELITFLD LYSYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA  120
DRMIRAENSR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERYQK AEISLCCVYK  180
RAGIEDHPSL PRSIPSRASS SRGTQSDKKH QSHVTVKGFQ PFLGQSSQQI EMEKMSETDA  240
SGSSDVTTAL GLSQHNINAY HPISTSIELP ASVEEGMFLN QTKQAASSFL VPNCPNLFTV  300
TSSVSSNPVY DDLHRLINYQ QADIGQQQQQ QFYLLQQHQP SPLSSMAPQS QSLPFNMLPN  360
LLPTTFPDRI WDWNQMPESN RDYNNPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-533618119165NO APICAL MERISTEM PROTEIN
1ut4_B8e-533618119165NO APICAL MERISTEM PROTEIN
1ut7_A8e-533618119165NO APICAL MERISTEM PROTEIN
1ut7_B8e-533618119165NO APICAL MERISTEM PROTEIN
4dul_A8e-533618119165NAC domain-containing protein 19
4dul_B8e-533618119165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G230800.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385105.20.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-114NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2K2AZ320.0A0A2K2AZ32_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-104NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]