PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G230800.1 | ||||||||
Common Name | POPTR_0004s23970g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 44472.5 Da PI: 6.3791 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.4 | 1.5e-49 | 35 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrF+Pt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + Potri.004G230800.1 35 MPGFRFRPTEEELIEFYLRRKVEGKHFNV-ELITFLDLYSYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 124 79***************************.89***************8778899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg +t+W+m+eyrl Potri.004G230800.1 125 RAENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 160 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-54 | 34 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.003 | 34 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 36 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MAIAATMSHN DENNNSNDNT NNKDDDDDHE HDMVMPGFRF RPTEEELIEF YLRRKVEGKH 60 FNVELITFLD LYSYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA 120 DRMIRAENSR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERYQK AEISLCCVYK 180 RAGIEDHPSL PRSIPSRASS SRGTQSDKKH QSHVTVKGFQ PFLGQSSQQI EMEKMSETDA 240 SGSSDVTTAL GLSQHNINAY HPISTSIELP ASVEEGMFLN QTKQAASSFL VPNCPNLFTV 300 TSSVSSNPVY DDLHRLINYQ QADIGQQQQQ QFYLLQQHQP SPLSSMAPQS QSLPFNMLPN 360 LLPTTFPDRI WDWNQMPESN RDYNNPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-53 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-53 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-53 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-53 | 36 | 181 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-53 | 36 | 181 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-53 | 36 | 181 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G230800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385105.2 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 1e-114 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2K2AZ32 | 0.0 | A0A2K2AZ32_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23970.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7203 | 31 | 46 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-104 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G230800.1 |
Entrez Gene | 18098384 |
Publications ? help Back to Top | |||
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