PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G228800.1 | ||||||||
Common Name | POPTR_0004s23770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 663aa MW: 73786.1 Da PI: 6.433 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.8 | 1.8e-22 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F Potri.004G228800.1 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL- 215 99****************************964333..4459************************************************. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 + +++el+v+v+r Potri.004G228800.1 216 -RGENGELRVGVRR 228 .449999*****97 PP | |||||||
2 | Auxin_resp | 107.5 | 1.5e-35 | 254 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++ ++k+svGmRfkm+fe+e+++err+sGt+vgv d ++ W +S WrsLk Potri.004G228800.1 254 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEVRNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNISSGWADSDWRSLK 336 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.76E-44 | 118 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 125 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.20E-21 | 126 | 228 | No hit | No description |
SMART | SM01019 | 1.0E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-20 | 128 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.279 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-33 | 254 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.2E-7 | 530 | 574 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.256 | 538 | 631 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.14E-9 | 541 | 615 | No hit | No description |
Pfam | PF02309 | 5.0E-6 | 582 | 628 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MAFAAMNHTS GGNPHAGGCN DALYKELWHA CAGPLVTLPR EGELVYYFPQ GHMEQLEASM 60 HQGMEPQMPL FNLPSKILCK VVNVQRRAEP ETDEVYAQIT LLPEPDQSEV TSPDPPLPEP 120 ERCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQTNMPSSV 240 ISSQSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS LNKYLEVRNH KLSVGMRFKM 300 RFEGEEVPER RFSGTIVGVG DNISSGWADS DWRSLKVQWD EPSSIMRPER VSHWELEPLV 360 ATTPSNSQPV QRNKRARPYV IPSPTADLSA LGMWKSPVES SALSYGDSQR GRDLYSSPNF 420 STTAKVNSLG FRGNSQVASV SHNSMHWPNR VESVTDSFAP VVNKDSGERR QGTGIGYKLF 480 GIQLVENSNT EGTSPVVVSG TVVNDLPVLS LEAESDQHSE PEKSCLRSSQ ELQSRQIRSC 540 TKVHMQGVAV GRAVDLTQFK RYEDLLRKLE EMFDIEGELS GSTKKWQVVY TDNEDDMMKV 600 GDDPWNEFCG MVKKIFIYTS EEVKRLSPKI KLLAEEEVKG IGDNADAAVN TEDRSSTIGP 660 GC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 3 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 3 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 3 | 359 | 1 | 355 | Auxin response factor 1 |
4ldx_A | 0.0 | 3 | 359 | 1 | 355 | Auxin response factor 1 |
4ldx_B | 0.0 | 3 | 359 | 1 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G228800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM113035 | 0.0 | KM113035.1 Populus davidiana x Populus alba var. pyramidalis auxin response factor 1 family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385087.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_024455395.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_024455396.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | B9N0I3 | 0.0 | B9N0I3_POPTR; Auxin response factor | ||||
STRING | POPTR_0003s00890.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6802 | 26 | 38 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G228800.1 |
Entrez Gene | 18098365 |
Publications ? help Back to Top | |||
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