PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G222200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29526.5 Da    PI: 5.9374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G222200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-162466850
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            +fskR +++ KKA+EL +LCd++++++ f+++ ++++++
  Potri.004G222200.1 24 SHAMSFSKRTKTLKKKAHELQTLCDVKICMVCFGPDSTVQTWP 66
                        56689*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-41267IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.0312169IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-142186IPR002100Transcription factor, MADS-box
PfamPF003197.5E-152165IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAEIGTTRMP NHQRKKILNR DQASHAMSFS KRTKTLKKKA HELQTLCDVK ICMVCFGPDS  60
TVQTWPEGAV EVKDAIMSYK GLGDRKKYES SLLGYLHDKK MKLEVKKRKV MKKKVNKELI  120
VKWSDHVDGL SDDALRDTVN TLESRLFDLK EKIKLCMQRD KVEAIQDHVD MEFEMDGSSV  180
PSSAAGATAW PADVMDTNIN VVETVGNNDK DAASTSFEMP PLPKDSSDWM ESLRNWMEND  240
EAYQHGFEND DWFNEWEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G222200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455425.10.0agamous-like MADS-box protein AGL75
TrEMBLA0A2K2AYI70.0A0A2K2AYI7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23090.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616059
Representative plantOGRP1213926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.12e-13AGAMOUS-like 75