PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G222100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 582aa    MW: 61349.1 Da    PI: 7.2639
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G222100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.43.4e-401622692115
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                         +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+  i+++tgt++++a+++  ++s +ss+s+ s++   
  Potri.004G222100.1 162 TPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAESTIIAATGTGTIPANFStLNVSLRSSGSTLSAP--- 249
                         678******************************************************************9997788888887744443... PP

                 TCP  92 ksaakskksqksaasalnlakesr 115
                             +sk++++s +sal l+++ +
  Potri.004G222100.1 250 ----PSKSAPHSFHSALGLSHHPH 269
                         ....44444444444455555433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.6E-38167285IPR005333Transcription factor, TCP
PROSITE profilePS5136927.056168222IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MELSNSQSNK ENNTTQEPHQ SHHHHRQHLQ QQLSFDHGRS SSSGGGGGGG GGGGPSQGPF  60
MGSISIQAGL HHHHNLGASS TPTTANTGSV PSPSSSPLSS SSSSTSASTS STTPPRLVDA  120
SLAIATSYDP SLVDSTKKKQ QNLSIAPAAT NSTSAATTAA VTPAKRSTKD RHTKVDGRGR  180
RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAESTII AATGTGTIPA NFSTLNVSLR  240
SSGSTLSAPP SKSAPHSFHS ALGLSHHPHY EEGFAHSAFL GFQQQHQQQH HLMTADQIAQ  300
ALPIGADGGG GGGESRGGGE ENYMRKRFRE DLFKEDNPQE QGESGGGRGG GGDGGEEPPI  360
KAFKSDLQLP KPQQQETGSS GLLRPSNILP TTAMWAMAPA PPSSGAGNTF WMLPMTAGAG  420
GGPPLATSVA CPSSEPQIWP FATATPASGN PLQAPLHFVP RFNLPTTSLE FQRGRGSPLQ  480
LGSMSPLQLG SMLMQQQHQQ QQQQQQQQHQ QQQPSQYLGL GMPESNLGML AALNAYSRGD  540
LNMNSQQNNP LDHHHQHHHQ HHHHQTQGTP DSGDEDPNTS Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345351GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G222100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385015.20.0transcription factor TCP8
TrEMBLA0A2K2AYJ20.0A0A2K2AYJ2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-50TCP family protein