PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G219800.1 | ||||||||
Common Name | POPTR_0004s22940g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 126aa MW: 14732 Da PI: 9.5539 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.7 | 1.8e-12 | 7 | 104 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 f k+l++ dv +r+ +p ++ + +g++ ++++++ + ++g sW+++++ rkk+ vl++GW e+ ++++L+egD v F l+ Potri.004G219800.1 7 FTKILSRTDVE--HRMAIPMGSFDVFqipQGEHSKQFDVIDMIKTGHSWSFRCSTRKKD-FypkPVLSSGWIEYIREKDLREGDQVSFFLV 94 77888555555..679****99977788877767777777777**********655555.348899**********************998 PP SS.SEE..EE CS B3 86 gr.sefelvv 94 ++ e+ l++ Potri.004G219800.1 95 QKdGEEGLRL 104 6545555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.77E-13 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-14 | 4 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.418 | 5 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.74E-16 | 6 | 99 | No hit | No description |
Pfam | PF02362 | 2.6E-9 | 7 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MYQRLIFTKI LSRTDVEHRM AIPMGSFDVF QIPQGEHSKQ FDVIDMIKTG HSWSFRCSTR 60 KKDFYPKPVL SSGWIEYIRE KDLREGDQVS FFLVQKDGEE GLRLGVQAQK KLIRLWGKDC 120 WTAPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G219800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216689 | 0.0 | AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455931.1 | 5e-72 | uncharacterized protein LOC18098285 | ||||
TrEMBL | B9PC87 | 8e-88 | B9PC87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s22940.1 | 1e-88 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G219800.1 |
Entrez Gene | 18098285 |