PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G216900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 309aa    MW: 33535.4 Da    PI: 7.8806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G216900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005128150123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++sF++   L  H  +H
  Potri.004G216900.1 128 YECKTCNRSFPSFQALGGHRASH 150
                         99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13127152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-8127150No hitNo description
SMARTSM003550.06128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-8203230No hitNo description
PfamPF139121.3E-11207232IPR007087Zinc finger, C2H2
SMARTSM003550.058208230IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEAQDDFVGS NDLTQIIKGK RTKRQRSSSP YMVMTSSSSS GYGGGDGGGE RGVLIEEHGS  60
ISSPTTSSEV TERTEEEEDM ANCLILLAQG DRPKQIHENK SGKVEKFRAR KSSDMSTPTI  120
NKAGFLVYEC KTCNRSFPSF QALGGHRASH KRPKATAEEK KGLVVASMED LGVCQLIKRS  180
NLDPSLSLQI GHNNNVNKGF QGNKAKTHEC SICGSEFMSG QALGGHMRRH RANTGNQAGM  240
ITTDSSSATA ESNIHGDHHQ IKPKNILALD LNLPAPEDDH HLRESNFQFT STRQALVFSA  300
TALVDCHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.22950.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G216900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471530.0EF147153.1 Populus trichocarpa clone WS01228_G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384965.10.0zinc finger protein ZAT5
TrEMBLA9PFN00.0A9PFN0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-53C2H2 family protein
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]