PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G215100.1
Common NamePOPTR_0004s22490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 341aa    MW: 38183.6 Da    PI: 7.1345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G215100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-171765148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Potri.004G215100.1 17 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 65
                        79*********************************************97 PP
2Myb_DNA-binding37.26.7e-1272114246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Potri.004G215100.1  72 GEFSDEEDRVICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 114
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7881265IPR017930Myb domain
SuperFamilySSF466891.91E-2714112IPR009057Homeodomain-like
SMARTSM007174.3E-131667IPR001005SANT/Myb domain
PfamPF002497.1E-161765IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-241872IPR009057Homeodomain-like
CDDcd001673.40E-101965No hitNo description
PROSITE profilePS5129421.99766120IPR017930Myb domain
SMARTSM007173.1E-1170118IPR001005SANT/Myb domain
PfamPF002491.6E-1072114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2373120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MREMGRAPCC DKANVKKGPW SPEEDSKLKE YIEKYGTGGN WIALPQKAGL KRCGKSCRLR  60
WLNYLRPNLK HGEFSDEEDR VICSLFASIG SRWSIIAAQL PGRTDNDIKN YWNTKLKKKL  120
MAMAPQSQRK PPTFQSPHQT PPLSHSLPSM YKDSGGSFSY YSQNRSFTGF EPISQIPSSL  180
LSTNSVSLAT NSLLFQTTQE GLFSPMQYYH PVKDNYMVFG SEASCSSNSD GSCSLISYGR  240
EIKQEDMGFH SLMSSNGYGD QNQKVMLGSG NNGVEILNQW VEKPNGNIGE TPSDYDFIED  300
VKQQVSSSGN HNDVNGSNNN DNLLIDENKT PETVMYHYYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27171207108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.19100.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G215100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827140.0AC182714.2 Populus trichocarpa clone Pop1-86K15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454998.10.0transcription factor RAX2
TrEMBLA0A3N7EWJ80.0A0A3N7EWJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-78myb domain protein 36