PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G213300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 834aa    MW: 91420.8 Da    PI: 6.4781
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G213300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-096436801954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Potri.004G213300.1 643 FEHflHPYPTDADKHMLATQTGLSRNQVSNWFINARVR 680
                         554459******************************88 PP
2BELL96.12.9e-31499567472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e q+ kakLl l eeV++rYkqy++q+q+v+ssFe vagl +a+pY++l lk++S +FrcLk ai++q+
  Potri.004G213300.1 499 EYQQMKAKLLFLEEEVCRRYKQYHQQMQMVASSFESVAGLSAATPYVTLSLKTVSGNFRCLKHAIVDQL 567
                         67999*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.2E-35398565IPR006563POX domain
PfamPF075262.1E-35403564IPR006563POX domain
PROSITE profilePS5007111.985621684IPR001356Homeobox domain
SMARTSM003891.6E-9624688IPR001356Homeobox domain
CDDcd000862.79E-12624685No hitNo description
SuperFamilySSF466891.28E-16626689IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27627688IPR009057Homeodomain-like
PfamPF059201.9E-18641680IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MDTRNLSPDS HVAQQSRRDK LRVQQSLSSV QQIDEFPNCL EHYSIRPGLS PDPVHVRNIR  60
NGNILYDSTM FSSEMLNFAT SSHAVSASKD AIVDQELEPI PAEDSSFTSM SHPVLSNFNA  120
SSPKSTTCDP QECGNWRSLD SQQSYDMMVN YAGGSVGGER NQKPMFVGEV LSNNARVSNI  180
STSRQYWMPS YFENQDVQLP STLRNSSGEI LSDDSLKEAR EMQVTSLPPY QNTLLDVIPS  240
GCFRPRINER IVHPSYATES TALHIDNNTS TWMSRPLENY HHWSGEFGLI ARTSDQELRT  300
IGSDANTQGL SLSLSSINPP SKVEVTHFGE GCASEHLQLK VARVSQESQQ DSKIFKSSSF  360
CAMPKPSIMS KGGGKSLHDV VGTSTHAFRN TGPLGPFTGY ATILKSSGFL KPAQELLEEF  420
SIVTGPKLMR TFEMFERISG DQVSAPALAD TVNTVDEEGG TNGNDISGIS SSTFYSSNKR  480
SGSAGVGGGG SSCGSYGPEY QQMKAKLLFL EEEVCRRYKQ YHQQMQMVAS SFESVAGLSA  540
ATPYVTLSLK TVSGNFRCLK HAIVDQLKQV TKALGDDLFS RNTVAVGSKV DTSASRLSYM  600
DQSIQTNKSG GVNVGYHEPQ QHIWRPQRGL PERSVAVLRA WLFEHFLHPY PTDADKHMLA  660
TQTGLSRNQV SNWFINARVR LWKPMVEEIH LLEAKGLAEK AGKNDGNSAE GNSQSNDEEG  720
SNKFGTNSVL DKQMECYGIG SSGGCGEQLD AEQLSREKRS RVESQFPTTM DGSPMNFLPC  780
QRSGTDNGGL GAVSLTLGLR QGIESAQHQI QLQQHKGHFK QPFGGQMIHD FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15630687158Homeobox protein Meis1
4xrs_B2e-15630687158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G213300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384929.20.0BEL1-like homeodomain protein 4
TrEMBLA0A2K2AY550.0A0A2K2AY55_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-75BEL1-like homeodomain 8