PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G211800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 302aa    MW: 33973.3 Da    PI: 8.3409
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G211800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.2e-20236270135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +l
  Potri.004G211800.1 236 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGRL 270
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-17230284IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084230266IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-15233294No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14234267IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.42E-15235282No hitNo description
PROSITE patternPS003440236261IPR000679Zinc finger, GATA-type
PfamPF003201.2E-17236270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKEGMSKSWF FDKDFSGVPD NFFEDTLGCF DFPLEDVEPN GDDGEDWESK FRHLEPPSSN  60
LLTTFSTALC GEDASSLEPN YNSCSVLLNG SLQLKHWASS AEASSSRSKP ILCRSSDSKY  120
SHLFQATSPV SVLESSGSSC PTENATTYYP KFVTPVKRPR SKLPRLRRQT FPFIPTACAS  180
KKFYCSASSD PELEYYNDEE ILDSSRKQQK KRNLMLLSSA VEMAPKMKQP VETRRCTHCQ  240
VTKTPQWREG PLGPKTLCNA CGVRYRSGRL LPEYRPAASP TFVPFLHSNS HRKVLEMRKQ  300
T*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G211800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2240741e-131CU224074.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384911.20.0GATA transcription factor 11 isoform X1
TrEMBLA0A2K2AY200.0A0A2K2AY20_POPTR; GATA family protein
STRINGPOPTR_0004s22140.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-44GATA transcription factor 11