PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G211700.1 | ||||||||
Common Name | POPTR_0004s22130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 709aa MW: 78055.3 Da PI: 8.6649 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.6e-23 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ + tl+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Potri.004G211700.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TLIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 199 89****************************996555545..8************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++ l+v+++r+ Potri.004G211700.1 200 -RAENGDLCVGIRRA 213 .4488999****997 PP | |||||||
2 | Auxin_resp | 112.1 | 5.3e-37 | 275 | 357 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a a+++++F+vvY+Prast+eF+vk+++v++a+++ ++ GmRfkmafetedss++++ +Gtv++v+ +dp rWpnS+Wr+L+ Potri.004G211700.1 275 AGLAANGNPFQVVYYPRASTPEFCVKASSVRAAMRTCWCSGMRFKMAFETEDSSRISWfMGTVASVQVADPDRWPNSPWRLLQ 357 66799****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-38 | 102 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-29 | 109 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-21 | 111 | 212 | No hit | No description |
Pfam | PF02362 | 8.3E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-32 | 274 | 357 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.151 | 594 | 672 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MKKTDKKSLD PQLWQACAGS MVQIPPLNTK VFYFPQGHAE HSQSPVDFPQ RIPSLVLCRV 60 ASVKFLADPG TDEVFAKISL VPLPDADLDI SQDVDICGDG NDSNNAEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TLIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGVGIG SGPESSPSHI GWNSNNATSA 240 NPYGGFSLSV KEDEMRNGGV KGRGRVKSEE VLEAAGLAAN GNPFQVVYYP RASTPEFCVK 300 ASSVRAAMRT CWCSGMRFKM AFETEDSSRI SWFMGTVASV QVADPDRWPN SPWRLLQVTW 360 DEPDLLQTVK CVSPWLVELV SNMPVIHLSP FSPPRKKLRF PQQLDFPLDG QFQLPSFSGN 420 PLGPSSPLCC LSDNTPAGIQ GARHAQFGIS LSDFQFKKKL QSGLFLSSLQ RFNPRTKNSE 480 NYPTGHPDSN KNLSCLLTKG SSNPKLEKSD NAKKHQFLLF GQPILVEQQI SHSCSADAFP 540 QVVNERNSSD SNREKNSDVL RSAPGKQISQ EKSCTTGFSW HQSLQNTSEN GMDTGHCKAF 600 LESEDLGRTL DLSALHSYEE LRRKLAIMFG IERSDMLSHV LYRDVTGAVK QIGDEPFSVF 660 MKTAKRLTIL MNRASGNSVG RRTWITGMRN AENGLEAPNK TGPLSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-77 | 4 | 378 | 46 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G211700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384909.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_024455732.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | B9MZ57 | 0.0 | B9MZ57_POPTR; Auxin response factor | ||||
STRING | POPTR_0004s22130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G211700.1 |
Entrez Gene | 18098203 |
Publications ? help Back to Top | |||
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