PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G187000.1 | ||||||||
Common Name | POPTR_0004s19820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24689.2 Da PI: 8.8244 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 59 | 110 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + ++Wv+e+r+p +k+ r++lg+f ++e+Aa+a++ a+++l+ge Potri.004G187000.1 59 PVYRGVRKRN-GNKWVCEVREP---NKKSRIWLGTFTSPEMAARAHDVAALALKGE 110 68*****887.9******9998...347*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-12 | 59 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-20 | 60 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-26 | 60 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 60 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.377 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-28 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 2.5E-7 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-7 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEFENHSPSI SSLRQNLSCK PCNNPINYIY NLKQAQERPV TVLKKKKAGR KKFKETRHPV 60 YRGVRKRNGN KWVCEVREPN KKSRIWLGTF TSPEMAARAH DVAALALKGE TATLNFPDSA 120 LILPRAKSSS AGDIRRAARD AALNDDPFSM VMMSCPNNCS EKVSHQPNAL FFDEEALFNM 180 PGLLDSMAEG LILTPPVMQR GFNWDDMACS TDLTLWEED* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G187000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF151459 | 0.0 | EF151459.1 Populus trichocarpa C-repeat binding facor 5 (CBF5) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455149.1 | 2e-88 | dehydration-responsive element-binding protein 1B | ||||
Swissprot | A2WZI4 | 2e-55 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 2e-55 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A9PL46 | 4e-87 | A9PL46_POPTR; C-repeat binding facor 5 | ||||
STRING | POPTR_0004s19820.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-35 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G187000.1 |
Entrez Gene | 18097973 |
Publications ? help Back to Top | |||
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