PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G181900.1
Common NamePOPTR_0004s18860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 279aa    MW: 32364.2 Da    PI: 8.5947
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G181900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.2e-47111373128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pGfrFhPt+eel+++yLk+ v g+k++l +vi  ++iy+++P++Lp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++
  Potri.004G181900.1  11 PGFRFHPTEEELLDFYLKNMVFGRKMRL-DVIGYLNIYRHDPSELPGLSKVGEREWYFFVPRDRKHGNGGRPNRTTQNGFWKATGSDRKIV 100
                         9**************************9.99***************8778899*************************************9 PP

                 NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s    ++ +g +ktLvfykgrap+g+ktdWvm+eyrl
  Potri.004G181900.1 101 SLsdPKRMIGFRKTLVFYKGRAPRGSKTDWVMNEYRL 137
                         97666778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.5359156IPR003441NAC domain
SuperFamilySSF1019411.57E-5510156IPR003441NAC domain
PfamPF023652.6E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDEMPLQLDL PGFRFHPTEE ELLDFYLKNM VFGRKMRLDV IGYLNIYRHD PSELPGLSKV  60
GEREWYFFVP RDRKHGNGGR PNRTTQNGFW KATGSDRKIV SLSDPKRMIG FRKTLVFYKG  120
RAPRGSKTDW VMNEYRLPEY SSPLPKDIVL CKIYRKATSL KVLEQRAAME EEMKTIHASP  180
SSSSLDTMSF CSQPEDPVPP ELPTQHLVFK KEIEDDIIRY EKPREIKGPS LQLPMGTDKL  240
PELQVPSKLS MEWNQDPIWS LNSPWLQNLI PYADILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-45716117173NAC domain-containing protein 19
3swm_B5e-45716117173NAC domain-containing protein 19
3swm_C5e-45716117173NAC domain-containing protein 19
3swm_D5e-45716117173NAC domain-containing protein 19
3swp_A5e-45716117173NAC domain-containing protein 19
3swp_B5e-45716117173NAC domain-containing protein 19
3swp_C5e-45716117173NAC domain-containing protein 19
3swp_D5e-45716117173NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.14840.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G181900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248830.0CU224883.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305547.10.0NAC domain-containing protein 22
SwissprotQ10S651e-93NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A3N7EU840.0A0A3N7EU84_POPTR; Uncharacterized protein
STRINGPOPTR_0004s18860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-112NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]