PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G162600.3

Common Name

POPTR_0004s16950g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

DBB

Protein Properties

Length: 204aa MW: 22668.5 Da PI: 6.1492

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G162600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.6	5.2e-08	3	33	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++lfC ++ lC++C ++ H Potri.004G162600.3 3 MLCDVCESAAAILFCAADEAALCRSCDEKVH 33 78**************************998 PP
2	zf-B_box	25.6	2.5e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + + C+ +e+ ++ ++Ce +++ lC +C + H g H Potri.004G162600.3 52 DVPQCDICEKAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 5689**************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.1E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.253	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.1E-6	3	41	IPR000315	B-box-type zinc finger
CDD	cd00021	1.67E-6	4	45	No hit	No description
SMART	SM00336	7.9E-10	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.731	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-5	53	85	IPR000315	B-box-type zinc finger
CDD	cd00021	3.10E-6	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009640	Biological Process	photomorphogenesis
GO:0005634	Cellular Component	nucleus
GO:0000989	Molecular Function	transcription factor activity, transcription factor binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MRMLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPQCDICE 60 KAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGC TEEQGQQPLD 120 DNETRRDQNQ PPKLTARENQ QNHRASPVPM VENNTDSDGK MDNKLIDLNA RPQRVHGKNP 180 TNQENHESSS LAPFGFFKGE PQK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.4957	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G162600.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145766	1e-172	EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306138.1	1e-151	B-box zinc finger protein 19 isoform X1
Refseq	XP_024454836.1	1e-151	B-box zinc finger protein 19 isoform X1
Refseq	XP_024454837.1	1e-151	B-box zinc finger protein 19 isoform X1
Swissprot	C0SVM5	1e-83	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	B9H0Y0	1e-149	B9H0Y0_POPTR; DBB family protein
STRING	POPTR_0004s16950.1	1e-150	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	5e-86	DBB family protein

Link Out ? help Back to Top
Phytozome	Potri.004G162600.3
Entrez Gene	7470030