PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G161500.1
Common NamePOPTR_0004s16860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 328aa    MW: 36306.5 Da    PI: 8.3278
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G161500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83e-18246279134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Potri.004G161500.1 246 CSHCQVQKTPQWRTGPHGAKTLCNACGVRYKSGR 279
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-825325IPR016679Transcription factor, GATA, plant
SuperFamilySSF577164.42E-14240302No hitNo description
SMARTSM004011.1E-14240294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.609240276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-15244277IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.24E-14245302No hitNo description
PfamPF003201.6E-16246279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440246271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEFCMETRAL KSSLRNELAT KSTQQAISED FFAFNASAVV SSDQDFSVDC FLDFSNGEFK  60
DGYAQEEEEK DSLSVSSQDR VDDDFNSNSS SFSDSFLSSE LAVPTDDIAE LEWVSHFVND  120
SLSDVSLLVP ACKGKPESHA KNRFEPEPKP SLAKTPGFFP PRVPSKARTK RSRRTGRTWS  180
GRSNQTETPS SSASSTSSMP CLVSANTVQT IDSLSWLSEP PMKKPKKRPA VQTSGITAAP  240
QFQRRCSHCQ VQKTPQWRTG PHGAKTLCNA CGVRYKSGRL FPEYRPACSP TFSSEVHSNS  300
HRKVLEMRRK KEMGGPESRL NQMVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G161500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305457.20.0GATA transcription factor 5
SwissprotQ9FH571e-63GATA5_ARATH; GATA transcription factor 5
TrEMBLB9H0W80.0B9H0W8_POPTR; GATA transcription factor
STRINGPOPTR_0004s16860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-54GATA transcription factor 5