PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G161000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 192aa    MW: 21419.6 Da    PI: 7.6903
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G161000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06544437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         +C+ +++ e++ fC  ++  lC+ C    H+       H
  Potri.004G161000.2  5 IRCDVCDNVEATVFCCADEAALCDGCDHRVHHAnklaskH 44
                        58******99******************997443666666 PP
2zf-B_box29.41.6e-095694238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        e + C+ ++e ++ lfC++++  lC++C l +Hk   Ht
  Potri.004G161000.2 56 ESPLCDICQERRALLFCQEDRAILCRECDLPIHKAneHT 94
                        6789*****************************878865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94249IPR000315B-box-type zinc finger
SMARTSM003362.5E-8249IPR000315B-box-type zinc finger
CDDcd000217.80E-5549No hitNo description
SMARTSM003368.5E-1655102IPR000315B-box-type zinc finger
PROSITE profilePS5011910.46655102IPR000315B-box-type zinc finger
PfamPF006436.3E-85694IPR000315B-box-type zinc finger
CDDcd000211.46E-958102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVMKIRCDVC DNVEATVFCC ADEAALCDGC DHRVHHANKL ASKHSRFSLV HPSFKESPLC  60
DICQERRALL FCQEDRAILC RECDLPIHKA NEHTQKHNRF LLTGVKLSAS SSLHTASSTS  120
TNNFDSNINT TSNRNHQPYL KNSNEILSSP SAGASMIFLI LHLLAIMVAI RFGVHPISKE  180
RDLFFLGFCI F*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G161000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454941.11e-107B-box zinc finger protein 20 isoform X1
RefseqXP_024454942.11e-107B-box zinc finger protein 20 isoform X2
SwissprotQ0IGM72e-60BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2K2AVH01e-106A0A2K2AVH0_POPTR; Uncharacterized protein
TrEMBLA0A3N7F1781e-106A0A3N7F178_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16810.11e-104(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-58DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]