PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G159300.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 672aa    MW: 73218.9 Da    PI: 6.3163
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G159300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094174541954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Potri.004G159300.3 417 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 454
                         664459******************************88 PP
2BELL129.51.1e-41279350172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ g+g+akpYt+lAl++iSrhFrcL+dai++qi
  Potri.004G159300.3 279 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVISGCGAAKPYTALALQTISRHFRCLRDAITGQI 350
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-68203348IPR006563POX domain
PfamPF075261.6E-52209347IPR006563POX domain
PROSITE profilePS5007112.163395458IPR001356Homeobox domain
SMARTSM003891.0E-9398462IPR001356Homeobox domain
CDDcd000864.36E-13398459No hitNo description
SuperFamilySSF466892.57E-17399465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29401464IPR009057Homeodomain-like
PfamPF059204.5E-18415454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MATYYTSSNN QRDGAAMVYL PGSYPEAPVL PGNMMMYMNS GSYSDNLAGN SHQQNNCIEF  60
QSVENSDSTP QQQEILSNLG GSRIGEHGFG AWRDGRNEML VMHSVSGASS VLHGAQSLQG  120
QGLSLSLGTQ IQSGIQMPSI SYRNTNPGLT SFLSPNSSIT GDGGGRNGSS RDDQSRNIDY  180
LTPGFSGGNH DMNKGDLSPY GMNSIARTIP NSKYLKAAQQ LLDEVVNVRK AIKQPDKEKN  240
QTTSEHGLNS AKDGDSGSKN GASNLQESTN SPSELSHAER QELQNKLTKL LSMLDEVDRR  300
YKQYYHQMQI VVSSFDVISG CGAAKPYTAL ALQTISRHFR CLRDAITGQI HATRKSLGEQ  360
ETSENSKGVG ITRLRYVDQH LRQQRALHQL GMMQQHAWRP QRGLPESSVS ILRAWLFEHF  420
LHPYPKDSDK IMLARQTGLT RSQVSNWFIN ARVRLWKPMV EEMYKEELGD AEMDSNSSSE  480
NAAKATKGDM GTSEDRGEEF QQSASSTATE RCSAGQLMDP KSDHVPDMEM AGSTTRSNFQ  540
NGTRGEAFTE YGLLKLREDQ RPSMDDCGLF SDAMAHSEGG GDRFMAAAAA AYQMSEVGRF  600
GNGSGVSLTL GLQHCEGGNL PMPGTTHHGF VSMRGDDDIY NAASSVGAGA TDFECLNPGN  660
RQHSSSQTLS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-17404461158Homeobox protein Meis1
4xrs_B5e-17404461158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G159300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288610.0CT028861.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454646.10.0BEL1-like homeodomain protein 6
TrEMBLA0A2K2AVE80.0A0A2K2AVE8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16660.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-134BEL1-like homeodomain 7