PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G141200.1 | ||||||||
Common Name | POPTR_0004s14840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 29855.5 Da PI: 8.1923 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ ++g Potri.004G141200.1 131 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFSTAEEAARAYDKAAIDFRG 180 59*******.**********82....48**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 131 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-14 | 131 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-22 | 131 | 189 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.70E-34 | 131 | 188 | No hit | No description |
PROSITE profile | PS51032 | 25.238 | 131 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 131 | 194 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-12 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-12 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MQRPSKRSKI GEAPAATLFS PPGISPMRLT QDQESAVMVA ALRNVVSGTS STDFSREFNS 60 LNVPITTSYS QFGSRSSNGN GFCISIWPPS SDLDMCAVCK IKGCLGCNFF PPNQEDKKDD 120 KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RRAARVWLGT FSTAEEAARA YDKAAIDFRG 180 PRAKLNFPFP DSGISSFEES KEKQEEQAKQ QEISEKKSGF EAEMGKESEF WDKIGDDEIH 240 EWMMMMLDFS NGDSSDSTGT ESAATIGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-23 | 130 | 189 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G141200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384411.1 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | B9N4Y0 | 0.0 | B9N4Y0_POPTR; ERF family protein | ||||
STRING | POPTR_0004s14840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 9e-38 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G141200.1 |
Entrez Gene | 18097788 |