PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G135100.1 | ||||||||
Common Name | POPTR_0004s14270g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 269aa MW: 29438.9 Da PI: 8.7245 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.8 | 8.5e-31 | 56 | 112 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + +rYkeClkNhAa++Gg+a+DGCgEf+p geeg+ +alkC+AC+CHRnFHR+e + Potri.004G135100.1 56 KVMRYKECLKNHAAAIGGNATDGCGEFIPG-GEEGSLEALKCSACNCHRNFHRKEIDG 112 5789*************************9.999********************9876 PP | |||||||
2 | Homeobox | 18.5 | 3.5e-06 | 203 | 258 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq + + ++ e k +++ ++ + L ++lg++ r+ kvW +N + Potri.004G135100.1 203 KRFRTKFTEEQKQKMLNFAEkagwKMQKLEESVVQGLCQELGIKRRVLKVWMHNNK 258 789************8866677778*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-23 | 58 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.2E-28 | 58 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-29 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.979 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 197 | 263 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.535 | 200 | 264 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.03E-19 | 200 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-25 | 202 | 258 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 8.31E-4 | 203 | 256 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDESSLQKDM PISRNGSYAG GNGHSHTVTS AAAAQVPTIG HSSPSSQQED QRPYKKVMRY 60 KECLKNHAAA IGGNATDGCG EFIPGGEEGS LEALKCSACN CHRNFHRKEI DGECSYDCHH 120 HYPVMSNIGS GRLISGHHNG IIGSPPQGYP TSSFISSRAP PPHQVVVSYK NGGANAITSE 180 SDEKEEDNGG GILTTRPVEK LRKRFRTKFT EEQKQKMLNF AEKAGWKMQK LEESVVQGLC 240 QELGIKRRVL KVWMHNNKHN YVKNSTSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-20 | 201 | 260 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G135100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC185361 | 0.0 | AC185361.2 Populus trichocarpa clone Pop1-55D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306012.2 | 0.0 | zinc-finger homeodomain protein 3 | ||||
Swissprot | O64722 | 4e-67 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | B9H431 | 0.0 | B9H431_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s14270.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-69 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G135100.1 |
Entrez Gene | 7472590 |
Publications ? help Back to Top | |||
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