PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G126500.1
Common NamePOPTR_0004s12500g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 335aa    MW: 36770.4 Da    PI: 8.6242
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G126500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.31.1e-3476132459
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  Potri.004G126500.1  76 ITYKECLKNHAATIGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPED 132
                         79***************************9999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2376129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2876130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3177129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.94478129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-29204275IPR009057Homeodomain-like
SuperFamilySSF466897.36E-19205274IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-25213270IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDITPATATA TATGTATTPT NNNTNTTIPK SPEADTGTPT RIPQTKPLSF TNGVLKRHHP  60
HHHHLHNHFA PPPVVITYKE CLKNHAATIG GHALDGCGEF MPSPTATHTD PTSLKCAACG  120
CHRNFHRREP EDSPPHTTAI TTIEYQPHHR HHPPPPQAHP QHNRSPNSAS PPPISSSYYP  180
SAPHMLLALS GGVSGLNENV NINAPPRAGS SPRKRFRTKF SQSQKERMHQ FAEKVGWKMQ  240
KRDEDLVQEF CNEVGVDRSA LKVWMHNNKN SFGKKEHLNG TNDDNIRSSN LENSYSNNES  300
NKDITNNNNN NNHHHFENDS HAAHVGTNGS SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-202142711875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G126500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2272360.0CU227236.1 Populus EST from severe drought-stressed leaves.
GenBankCU2288270.0CU228827.1 Populus EST from severe drought-stressed leaves.
GenBankCU2290160.0CU229016.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305381.30.0zinc-finger homeodomain protein 9
SwissprotQ9LXG07e-75ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2K2ATR00.0A0A2K2ATR0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-70homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]