PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G121800.1

Common Name

POPTR_0004s12120g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 504aa MW: 55067.6 Da PI: 5.2634

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G121800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	138	198	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Potri.004G121800.1 138 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 198 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	135	195	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	140	196	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	142	196	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	144	180	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MLEPKDPAIK LFGKTIQVTE ISSTTTTDND DSQDQDRPSC ASSSLYDADS DNNKRYHGEE 60 DIEADDKDSV EKSLTEKQED GVSPVATEEP SNPDATSGTS ENPKTPSIEK ESEGLQTSRT 120 EEEDSDTSNS PEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG 180 TMRNVPVGAG RRKNKNSASH YRHITIPEAL QNVRADVPNG VYHPSMKTNG TVLTFGSDTP 240 LHESMASVLN LADKTTRNCT RNGSHKPDAV RIPVSYGSGE NSDDHSNGSS VTVSNSIDEA 300 GKSMSKESAM QNCQGFPPEI PCFPGVPWPY PWNSAQWSSP LPPPAFCPPG FPMPFYPAAA 360 YWGCTVPGAW NIPWLPQPSS PKQTSSSSGP NSPTLGKHSR DENMLKSSNS EEGESAKENN 420 TERCLWIPKT LRIVDPGEAA KSSIWTTLGI KNDKPDLIGG RGLFKAFDSK VEKNHEAETS 480 PVLQANPAAL SRSLKFQESS YFG*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MLEPKDPAIK LFGKTIQVTE ISSTTTTDND DSQDQDRPSC ASSSLYDADS DNNKRYHGEE  60
DIEADDKDSV EKSLTEKQED GVSPVATEEP SNPDATSGTS ENPKTPSIEK ESEGLQTSRT  120
EEEDSDTSNS PEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG  180
TMRNVPVGAG RRKNKNSASH YRHITIPEAL QNVRADVPNG VYHPSMKTNG TVLTFGSDTP  240
LHESMASVLN LADKTTRNCT RNGSHKPDAV RIPVSYGSGE NSDDHSNGSS VTVSNSIDEA  300
GKSMSKESAM QNCQGFPPEI PCFPGVPWPY PWNSAQWSSP LPPPAFCPPG FPMPFYPAAA  360
YWGCTVPGAW NIPWLPQPSS PKQTSSSSGP NSPTLGKHSR DENMLKSSNS EEGESAKENN  420
TERCLWIPKT LRIVDPGEAA KSSIWTTLGI KNDKPDLIGG RGLFKAFDSK VEKNHEAETS  480
PVLQANPAAL SRSLKFQESS YFG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.7617	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G121800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306032.2	0.0	cyclic dof factor 3
TrEMBL	A0A2K2ATH1	0.0	A0A2K2ATH1_POPTR; Uncharacterized protein
STRING	POPTR_0004s12120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-94	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Potri.004G121800.1
Entrez Gene	7463038