PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G120800.2
Common NamePOPTR_0004s12000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 483aa    MW: 53096.4 Da    PI: 7.2415
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G120800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33209265259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK++kgse+prsYY+Ct+ +C vkkkvers+ d++++ei+Y+g+Hnh+
  Potri.004G120800.2 209 DDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCLVKKKVERSS-DGQITEIIYKGQHNHD 265
                         8****************************************.***************7 PP
2WRKY107.37.4e-34368426159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+
  Potri.004G120800.2 368 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVITTYEGKHNHD 426
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.915203267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-29205266IPR003657WRKY domain
SuperFamilySSF1182902.75E-26206266IPR003657WRKY domain
SMARTSM007743.3E-38208266IPR003657WRKY domain
PfamPF031069.4E-26209265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37354428IPR003657WRKY domain
SuperFamilySSF1182901.27E-29360428IPR003657WRKY domain
PROSITE profilePS5081138.733363428IPR003657WRKY domain
SMARTSM007744.5E-40368427IPR003657WRKY domain
PfamPF031061.8E-26369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAEKQENPTT AAPAKPTITL PPRPSMETLF TGGLSPGPMT LVSSFFADTP YPESDYPSFS  60
QLLAEDGINC NSNLGFKPSR PTNLVVARSP LFTVPPGLSP SGLLDSPAFF SPRSSFGMSH  120
QQALVQVTAQ AALFAQSQMH MQAQYQPSSV TAAKELLTQY PSFNPGEALQ QQQLMPPSTS  180
DAQNSMVEPA EFSHSERKYQ PPAGDKPTDD GYNWRKYGQK PIKGSEYPRS YYKCTHLNCL  240
VKKKVERSSD GQITEIIYKG QHNHDQLNKL SKDGDDSNGS IHSQSKPEVV SQAHADPSEP  300
PGSSDNEEAG NAAVQEEERG DDEPIPKRRQ VWDVSLQIDV VTSEVTLPHK TITEPKIIVQ  360
TRSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTSAGCN VRKHVERAAA DPKAVITTYE  420
GKHNHDVPAA RNSSHNTANT NAAPLKPQKV VAEKHPMLKG MDFGNNNQRP LLLQLKEEKI  480
AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40209429878Probable WRKY transcription factor 4
2lex_A2e-40209429878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G120800.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454278.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-138WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K2ATH30.0A0A2K2ATH3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-120WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]