PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G120800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 544aa    MW: 59495.2 Da    PI: 7.7191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G120800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.9e-33252308259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK++kgse+prsYY+Ct+ +C vkkkvers+ d++++ei+Y+g+Hnh+
  Potri.004G120800.1 252 DDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCLVKKKVERSS-DGQITEIIYKGQHNHD 308
                         8****************************************.***************7 PP
2WRKY107.18.8e-34429487159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+
  Potri.004G120800.1 429 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVITTYEGKHNHD 487
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.915246310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-29248309IPR003657WRKY domain
SuperFamilySSF1182903.27E-26249309IPR003657WRKY domain
SMARTSM007743.3E-38251309IPR003657WRKY domain
PfamPF031061.1E-25252308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-37415489IPR003657WRKY domain
SuperFamilySSF1182901.57E-29421489IPR003657WRKY domain
PROSITE profilePS5081138.733424489IPR003657WRKY domain
SMARTSM007744.5E-40429488IPR003657WRKY domain
PfamPF031062.1E-26430487IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAEKQENPTT AAPAKPTITL PPRPSMETLF TGGLSPGPMT LVSSFFADTP YPESDYPSFS  60
QLLAGAMASP IARPAFFTDN LIPNNNNTNT NTNTNTNTTT TAIPSSKEDG INCNSNLGFK  120
PSRPTNLVVA RSPLFTVPPG LSPSGLLDSP AFFSPRSSFG MSHQQALVQV TAQAALFAQS  180
QMHMQAQYQP SSVTAAKELL TQYPSFNPGE ALQQQQLMPP STSDAQNSMV EPAEFSHSER  240
KYQPPAGDKP TDDGYNWRKY GQKPIKGSEY PRSYYKCTHL NCLVKKKVER SSDGQITEII  300
YKGQHNHDQL NKLSKDGDDS NGSIHSQSKP EVVSQAHAGN VNKLTETLPA HSVTRRDQES  360
TQADPSEPPG SSDNEEAGNA AVQEEERGDD EPIPKRRQID VVTSEVTLPH KTITEPKIIV  420
QTRSEVDLLD DGYRWRKYGQ KVVKGNPHPR SYYKCTSAGC NVRKHVERAA ADPKAVITTY  480
EGKHNHDVPA ARNSSHNTAN TNAAPLKPQK VVAEKHPMLK GMDFGNNNQR PLLLQLKEEK  540
IAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40252490878Probable WRKY transcription factor 4
2lex_A3e-40252490878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G120800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454278.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-144WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K2ATH30.0A0A2K2ATH3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-119WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]