PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G116100.2 | ||||||||
Common Name | POPTR_0004s11510g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 332aa MW: 36646 Da PI: 8.1107 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.1 | 2.3e-32 | 48 | 158 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++ +sn+ + Potri.004G116100.2 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPGNFSLNHQAMLGSSNEVGAsrss 138 689*************************************************************999999995555555555433332222 PP TCP 89 ...................k 89 + Potri.004G116100.2 139 kevfkmnngvdwedtsgftR 158 22333333333333333331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.469 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-29 | 50 | 190 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MITSSKQVDS PTKKEEDSND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPMPPGNFSL 120 NHQAMLGSSN EVGASRSSKE VFKMNNGVDW EDTSGFTRPS FWNADAILRA KSKEVMTDPV 180 NEKENWAKRD EEDKEDGSIE GNTAQALSSS FLQRASHSSL PGDIHNLNVV PLSSALSLSS 240 GSQILVCPPG TTQSYFPSHA TASMEIDPRQ INHFQWLTPS TQNLLPNSLT PSPYPISQSM 300 RPSQYFSVTP RVLHSQNSES PPDKDPQFPC K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-17 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-17 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G116100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024449007.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
Refseq | XP_024454632.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
TrEMBL | A0A2K1R563 | 0.0 | A0A2K1R563_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11510.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 2e-52 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G116100.2 |
Entrez Gene | 7463062 |