PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G115600.1 | ||||||||
Common Name | POPTR_0004s11460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24589.6 Da PI: 7.3012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v G g+W++++r+ g++R++k+c++rw +yl Potri.004G115600.1 12 KGPWTPEEDKLLSEYVSSNGEGRWSSVSRCSGLNRSGKSCRLRWVNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ Potri.004G115600.1 65 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.807 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-31 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-17 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-10 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 23.711 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-14 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 67 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-9 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGIAEQGW RKGPWTPEED KLLSEYVSSN GEGRWSSVSR CSGLNRSGKS CRLRWVNYLR 60 PGLKRGQITP QEEGIIIELH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKTDKSSQKQ 120 EKRKALILEQ EVQHHHQQQQ QLEAGEMKMV NTIDHVKMHE AQEMYFMYHN LEDQCSPVMT 180 QDVASWADFV VEDYYGLWGG LWNLDDHPQG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 12 | 112 | 7 | 106 | B-MYB |
1h8a_C | 2e-23 | 12 | 112 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G115600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454394.1 | 1e-158 | transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 7e-49 | MYB59_ARATH; Transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 9e-49 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2K2AT89 | 1e-156 | A0A2K2AT89_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11460.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 6e-76 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G115600.1 |
Entrez Gene | 7463060 |
Publications ? help Back to Top | |||
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