PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G115500.1
Common NamePOPTR_0004s11440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28412.3 Da    PI: 8.5822
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G115500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Potri.004G115500.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                        79***********************************************96 PP
2K-box89.46.6e-309117615100
               K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          s+++e+ k+k++ e Lqr+qR+llGedL++L+ keL+qLe+qLe+sl+++Rs+K++++l+q+ +lq+ke+ l e+n+ L+ kl+e
  Potri.004G115500.1  91 LSSYREYLKVKARFEALQRTQRNLLGEDLGPLNTKELEQLERQLESSLNQVRSTKTQYMLDQLADLQNKEHLLLEANRGLTIKLDE 176
                         56889***************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002652.27E-45278No hitNo description
SuperFamilySSF554559.42E-34277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.82690180IPR002487Transcription factor, K-box
PfamPF014861.4E-2593174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QKCSYGAEEV NKPAKELEVS LSSYREYLKV KARFEALQRT QRNLLGEDLG  120
PLNTKELEQL ERQLESSLNQ VRSTKTQYML DQLADLQNKE HLLLEANRGL TIKLDEISAR  180
NSLRPSWEGD DQQNMSYGHQ HAQSQGLFQA LECNPTLQIG YNPVGSDQMT ATTHATQQVH  240
GFIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-38751741101Developmental protein SEPALLATA 3
4ox0_B6e-38751741101Developmental protein SEPALLATA 3
4ox0_C6e-38751741101Developmental protein SEPALLATA 3
4ox0_D6e-38751741101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.34950.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G115500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7893980.0DQ789398.1 Populus tomentosa MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306051.20.0developmental protein SEPALLATA 2
RefseqXP_006384290.10.0developmental protein SEPALLATA 2
RefseqXP_011008140.10.0PREDICTED: developmental protein SEPALLATA 2-like
RefseqXP_011008141.10.0PREDICTED: developmental protein SEPALLATA 2-like
SwissprotQ8LLR21e-144MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLB9H0G01e-180B9H0G0_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_14.2221e-155(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-125MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]