PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G112900.3
Common NamePOPTR_0004s11180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 313aa    MW: 34415.1 Da    PI: 4.8718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G112900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.9e-184392255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+e E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L +++eYI+ Lq
  Potri.004G112900.3 43 RSKHSETEQRRRSKINERFQALRNLIPQN----DQKRDKASFLLEVIEYIQFLQ 92
                        899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-2438112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-2040112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4854191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-184396No hitNo description
PfamPF000102.6E-154392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-134797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVKSAKSQLD EEDEPEDYDS SSYKGEVLKP ESKSSEPKAN ANRSKHSETE QRRRSKINER  60
FQALRNLIPQ NDQKRDKASF LLEVIEYIQF LQEKLQVYEG SYEGWSQEPA KLLPWKIDRA  120
SAESLLDHTQ VMKNGSAHEN SVMLANVHNS IESDMGTAAM YKALDHPHGP TNPAIPFDVQ  180
TPSNVFAAVG RGGLPTQSLQ ESVSDVENMA YQLQSQLLHG RPCATECSTP NNTLNGQEDL  240
ASDSLSVNIS NAYSQQILNT LTQALQSSGV DLAQTSIGVQ IDVGKRENST TAVAPSSKVY  300
FYDPKLIIGS PI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.45180.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G112900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384263.10.0transcription factor BIM2 isoform X1
TrEMBLU5GF360.0U5GF36_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-58BES1-interacting Myc-like protein 2